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5.0.4
  • 1. Getting Started
  • 2. Python interfaces to STEPS
  • 3. Well-Mixed Reaction System
  • 4. Surface-Volume Reactions
  • 5. Diffusion in volumes and on surfaces
  • 6. Data recording and analysis
  • 7. Multi-state complexes
  • 8. Simulating membrane potential
  • 9. Parallel simulations
  • 10. Simulation visualization
  • 11. Stochastic Calcium Burst model with GHK currents
  • 12. Distributed mesh simulations
  • 13. Original STEPS API guides
  • 14. API References
  • 15. Customizing STEPS installation
STochastic Engine for Pathway Simulation
  • Overview: module code

All modules for which code is available

  • cysteps_dist
  • steps.API_1.geom
  • steps.API_1.model
  • steps.API_1.mpi.solver
  • steps.API_1.rng
  • steps.API_1.solver
  • steps.API_1.utilities.geom_decompose
  • steps.API_1.utilities.meshctrl
  • steps.API_1.utilities.meshio
  • steps.API_1.utilities.metis_support
  • steps.API_1.utilities.morph_support
  • steps.API_1.utilities.sbml
  • steps.API_1.utilities.steps_cubit
  • steps.API_1.utilities.steps_shadow
  • steps.API_1.visual.Colors
  • steps.API_1.visual.Control
  • steps.API_1.visual.DynamicComponent
  • steps.API_1.visual.PartitionViewer
  • steps.API_1.visual.Plotting
  • steps.API_1.visual.SimDisplay
  • steps.API_1.visual.StaticComponent
  • steps.API_2.geom
  • steps.API_2.model
  • steps.API_2.rng
  • steps.API_2.saving
  • steps.API_2.sim
  • steps.API_2.utils
  • steps.API_2.visual

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