STochastic Engine for Pathway Simulation

To Reference STEPS:

I.Hepburn, W.Chen, S.Wils and E. De Schutter, STEPS: Efficient simulation of stochastic reaction-diffusion models in realistic morphologies. BMC Systems Biology 2012, 6:36. doi:10.1186/1752-0509-6-36. Article

To Reference the Parallelization Implementation:

W. Chen and E. De Schutter (2017). Parallel STEPS: Large Scale Stochastic Spatial Reaction-Diffusion Simulation with High Performance Computers. Front. Neuroinform. 11:13. doi: 10.3389/fninf.2017.00013. Article

I. Hepburn, W. Chen and E. De Schutter (2016) Accurate reaction-diffusion operator splitting on tetrahedral meshes for parallel stochastic molecular simulations. The Journal of Chemical Physics, 145, 054118. Article

Technical Reports:

I. Hepburn, H. Anwar and E. De Schutter, Technical report: Hybrid simulations in STEPS (2013). Article

User Manual:

STEPS online user manual and API references can be accessed from Here.